Specialty testing for Molecular Microbiology

References

• Stephen J. Salipante, Dhruba J. SenGupta, Lisa A. Cummings, Tyler A. Land, Daniel R. Hoogestraat, Brad T. Cookson
  Application of Whole-Genome Sequencing for Bacterial Strain Typing in Molecular Epidemiology.
  J. Clin. Microbiol. April 2015 vol. 53 no. 4 1072-1079
• Stephen J. Salipante, Toana Kawashima, Christopher Rosenthal, Daniel R. Hoogestraat, Lisa A. Cummings, Dhruba J. Sengupta, Timothy T. Harkins, Brad T. Cookson, Noah G. Hoffman
  Performance Comparison of Illumina and Ion Torrent NextGeneration Sequencing Platforms for 16S rRNA-Based Bacterial Community Profiling.
  Appl. Environ. Microbiol. December 2014 vol. 80 no. 24 7583-7591
• SenGupta DJ, Cummings LA, Hoogestraat DR, Butler-Wu SM, Shendure J, Cookson BT, Salipante SJ.
  Whole-Genome Sequencing for High-Resolution Investigation of Methicillin-Resistant Staphylococcus aureus Epidemiology and Genome Plasticity.
  J Clin Microbiol. 2014 Aug;52(8):2787-96. doi: 10.1128/JCM.00759-14. Epub 2014 May 21.
• Stephen J. Salipante, Dhruba J. Sengupta, Lisa A. Cummings, Aaron Robinson, Kyoko Kurosawa, Daniel R. Hoogestraat, Brad T. Cookson
  Whole genome sequencing indicates Corynebacterium jeikeium comprises 4 separate genomospecies and identifies a dominant genomospecies among clinical isolates.
  International Journal of Medical Microbiology, In Press.
• SenGupta DJ, Cummings LA, Hoogestraat DR, Butler-Wu SM, Shendure J, Cookson BT, Salipante SJ.
  Whole-Genome Sequencing for High-Resolution Investigation of Methicillin-Resistant Staphylococcus aureus Epidemiology and Genome Plasticity.
  J Clin Microbiol. 2014 Aug;52(8):2787-96. doi: 10.1128/JCM.00759-14. Epub 2014 May 21.
• Salipante SJ, Hoogestraat DR, Abbott AN, SenGupta DJ, Cummings LA, Butler-Wu SM, Stephens K, Cookson BT, Hoffman NG.
  Coinfection of Fusobacterium nucleatum and Actinomyces israelii in mastoiditis diagnosed by next-generation DNA sequencing.
  J Clin Microbiol. 2014 May;52(5):1789-92. doi: 10.1128/JCM.03133-13. Epub 2014 Feb 26.
• Salipante SJ, Sengupta DJ, Hoogestraat DR, Cummings LA, Bryant BH, Natividad C, Thielges S, Monsaas PW, Chau M, Barbee LA, Rosenthal C, Cookson BT, Hoffman NG.
  Molecular diagnosis of Actinomadura madurae infection by 16S rRNA deep sequencing.
  J Clin Microbiol. 2013 Dec;51(12):4262-5. doi: 10.1128/JCM.02227-13. Epub 2013 Oct 9.
• Stephen J. Salipante, Dhruba J. Sengupta, Christopher Rosenthal, Gina Costa, Jessica Spangler, Elizabeth H. Sims, Michael A. Jacobs, Samuel I. Miller, Daniel R. Hoogestraat, Brad T. Cookson, Connor McCoy, Frederick A. Matsen, Jay Shendure, Clarence C. Lee, Timothy T. Harkins, Noah G. Hoffman
  Rapid 16S rRNA Next-Generation Sequencing of Polymicrobial Clinical Samples for Diagnosis of Complex Bacterial Infections
  PLoS ONE 8(5): e65226. doi:10.1371 / journal.pone.0065226 Published: May 29, 2013.
• Desiree Marshall, MD; Dhruba J. SenGupta, PhD; Daniel R. Hoogestraat, MB(ASCP); Karen Stephens, PhD; Brad T. Cookson, MD, PhD; Cecilia C.S. Yeung, MD
  Multilocus Sequencing for Rapid Identification of Molds
  CAP Today Feature Story, February 2013.
• Salipante SJ, Hoogestraat DR, Sengupta DJ, Murphey D, Panayides K, Hamilton E, Castaneda-Sanchez I, Kennedy J, Monsaas PW, Mendoza L, Stephens K, Dunn JJ, Cookson BT
  Molecular Diagnosis of Subcutaneous Pythium insidiosum Infection by Use of PCR Screening and DNA Sequencing
  J Clin Microbiol. 2012 Apr;50(4):1480-3. Epub 2012 Jan 11. PMID: 22205808
• Murphy SC, Hoogestraat DR, Sengupta DJ, Prentice J, Chakrapani A, Cookson BT
  Molecular diagnosis of cystoisosporiasis using extended-range PCR screening
  J. Mol Diagn. 2011 May;13(3):359-62. Epub 2011 Mar 31. PubMed PMID: 21458380; PubMed Central PMCID: PMC3077734.
• Stockinger DE, Roellich KM, Vogel KW, Eiffert KL, Torrence AE, Prentice JL, Stephens KG, Wallis CK, Hotchkiss CE, Murnane RD.
  Primary hepatic Mycobacterium tuberculosis complex infection with terminal dissemination in a pig-tailed macaque (Macaca nemestrina).
  J Am Assoc Lab Anim Sci. 2011 Mar;50(2):258-62. PMID: 21439222
• Yager JE, Ford ES, Boas ZP, Haseley LA, Cookson BT, Sengupta DJ, Fang FC, Gottlieb GS
  Ureaplasma urealyticum continuous ambulatory peritonealdialysis-associated peritonitis diagnosed by 16S rRNA gene PCR
  J Clin Microbiol. 2010 Nov;48(11):4310-2. Epub 2010 Aug 25. PubMed PMID: 20739488; PubMed Central PMCID: PMC3020887.
• Dhruba J. SenGupta and Brad T. Cookson
  SeqSharp | A General Approach for Improving Cycle-Sequencing That Facilitates a Robust One-Step Combined Amplification and Sequencing Method
  Journal of Molecular Diagnostics, Vol. 12, No. 3, May 2010
• de Sanctis, Jorgelina T. MD; Carpenter, Christopher F. MD; Sims, Matthew D. MD, PhD; SenGupta, Dhruba J. PhD; Prentice, Jennifer L. MS, MT (ASCP); Cookson, Brad T. MD, PhD; Boyanton, Bobby L. Jr MD, MT (ASCP)
  Culture-Negative Endocarditis and the Use of Molecular Diagnostics: A Case Report
  Infectious Diseases in Clinical Practice, March 2010 , Volume 18, Issue 2, pp 120-123
• Woodward JF, Sengupta DJ, Cookson BT, Park JO, Dellinger EP
  Disseminated Community-Acquired USA300 Methicillin-Resistant Staphylococcus aureus Pyomyositis and Septic Pulmonary Emboli in an Immunocompetent Adult
  Surg Infections 2009 Nov 4 | PMID: 19888867
• Harrington AT, Creutzfeldt CJ, Sengupta DJ, Hoogestraat DR, Zunt JR, Cookson BT
  Diagnosis of Neurocysticercosis by Detection of Taenia solium DNA Using a Global DNA Screening Platform.
  Clinical Infectious Diseases 2009;48:Nov 24 | PMID: 19025499
• Hoffman N. G. and Cookson B. T.
  Case 8-2007: A Man with Chest Pain Followed by Cardiac Arrest. N. Engl. J. Med. 2007 365(25) 2652
• Nichols, W. G., J. Prentice, Y. Houze, L. Carlson, and B. T. Cookson
  Fatal pulmonary infection associated with a novel organism Parastreptomyces abscessus. J. Clin. Microbiol. 2005 43(10): 5376-79.
• Rakeman, J. L., U. Bui, K. LaFe, M. B. Coyle, and B. T. Cookson
  Multilocus DNA sequence comparisons rapidly identify pathogenic molds. J. Clin. Microbiol. 2005 43(7): 3324-3333.
• Pottumarthy, S., J. M. Schapiro, J. L. Prentice, Y. B. Houze, S. R. Swanzy, F. C. Fang, and B. T. Cookson
  Clinical isolates of Staphylococcus intermedius masquerading as Methicillin-resistant Staphlococcus aureus. J. Clin. Microbiol. 2004 42(12): 5881-5884.
• Panackal, A. A., Y. B. Houze, J. Prentice, S. S. Leopold, B. T. Cookson, W. C. Liles, and A. P. Limaye
  Prosthetic joint infection due to Helcococcus pyogenes. J. Clin. Microbiol. 2004 42(6): 2872-4.
• Selvarangan, R., W-K. Wu, T. T. Nguyen, L. C. Carlson, C. K. Wallis, S. K. Stiglich, Y-C. Chen, K. C. Jost, Jr., J. L. Prentice, R. J. Wallace, S. L. Rassoulian Barrett, B. T. Cookson, and M. B. Coyle
  Characterization of a novel group of mycobacteria: Proposal of Mycobacterium sherrisii sp.. J. Clin. Microbiol. 2004 42: 90-98.
• Selvarangan, R., U. Bui, A. P. Limaye, and B. T. Cookson
  Rapid Identification of Commonly Encountered Candida Species Directly from Blood Culture Bottles. J. Clin. Microbiol. 2003 41: 5660-5664.
• Novicki, T. J., K. LaFe, L. Bui, U. Bui, R. Geise, K. Marr, B. T. Cookson
  Genetic diversity among clinical isolates of Acremonium strictum determined during an investigation of a fatal mycosis.. J. Clin. Microbiiol. 2003 41: 2623-2628.
• Pottumarthy, S., A. P. Limaye, J. L. Prentice, Y. B. Houze, S. R. Swanzy, and B. T. Cookson
  Nocardia veterana, a New Emerging Pathogen. J. Clin. Microbiol. 2003 41: 1705-1709.
• Selvarangan, R., A. P. Limaye, and B.T. Cookson
  Rapid identification and differentiation of Candida albicans and C. dubliniensis by capillary-based amplification and fluorescent probe hybridization. J Clin. Microbiol. 2002 40: 4308-4312.
• Lingappa, J., W. Lawrence, S. West-Keefe, R. Gautom, and B. T. Cookson
  Diagnosis of community-acquired Pertussis infection: Comparison of both culture and fluorescent-antibody assays with PCR detection using electrophoresis and dot blot hybridization. J. Clin. Microbiol. 2002 40: 2908-2912.
• Chen,Y-C, J. D. Eisner, M. M. Kattar, S. L. Rassoulian-Barrett, K. Lafe, A. P. Limaye, and B. T. Cookson
  Polymorphic Internal Transcribed Spacer Region 1 DNA Sequences Identify Medically Important Yeasts. J. Clin. Microbiol. 2001 39: 4042-4051.
• Kattar, M. M., B. T. Cookson, L. C. Carlson, S. Stiglich, M. Schwartz, T. Nguyen, R. Daza, C. K. Wallis, S. L. Yarfitz, and M. B. Coyle
  Tsukamurella strandjordae sp. nov., a Proposed New Species Causing Sepsis . J. Clin. Microbiol. 2001 39: 1467-1476.
• Rassoulian-Barrett, S. L., B. T. Cookson, L. C. Carlson, K.A. Bernard, and M. B. Coyle
  Diversity within Reference Strains of Corynebacterium matruchotii Includes Corynebacterium durum and a Novel Organism. J. Clin. Microbiol. 2001 39: 943-948.
• Limaye A. P., Connolly P. A., Sagar M., Fritsche T. R., Cookson B. T., Wheat L. J., Stamm W. E.
  Transmission of Histoplasma capsulatum by Organ Transplantation. N Engl J Med. 2000, 343 (16): 1163-1166
• Chen, Y-C, J. D. Eisner, M. M. Kattar, S. L. Rassoulian-Barrett, K. LaFe, S. L. Yarfitz, A. P. Limaye, and B. T. Cookson
  Identification of Medically Important Yeasts Using PCR-Based Detection of DNA Sequence Polymorphisms in the Internal Transcribed Spacer 2 Region of the rRNA Genes . J. Clin. Microbiol. 2000 38: 2302-2310.
• Limaye, A. P., D. K. Turgeon, B. T. Cookson, and T. R. Fritsche
  Pseudomembranous Colitis Caused by a Toxin A B+ Strain of Clostridium difficile. J. Clin. Microbiol. 2000 38: 1696-1697.
• M. M. Kattar, J. F. Chavez, A. P. Limaye, S. L. Rassoulian-Barrett, S. L. Yarfitz, L. C. Carlson, Y. Houze, S. Swanzy, B. L. Wood, and B. T. Cookson
  Application of 16S rRNA Gene Sequencing To Identify Bordetella hinzii as the Causative Agent of Fatal Septicemia. J. Clin. Microbiol. 2000 38: 789-794.

Associated Tests

Last updated 2024-09-11T21:59:51.662577+00:00